Articles
Adolfi, M.C., Herpin, A., Schartl, M. 2021. The replaceable master of sex determination: bottom-up hypothesis revisited. Philosophical Transactions of the Royal Society B: Biological Sciences 376(1832): 20200090 [DOI]
Adolfi, M., Herpin, A., Martinez-Bengochea, A., Kneitz, S., Regensburger, M., Grunwald, D.J., Schartl, M. 2021. Crosstalk between retinoic acid and sex-related genes controls germ cell fate and gametogenesis in Medaka. Frontiers in Cell and Developmental Biology 8: 613497, 1-12 [DOI]
Adolfi, M.C., Du, K., Kneitz, S., Cabau, C., Zahm, M., Klopp, C., Feron, R., Paixão, R.V., Varela, E.S., de Almeida, F.L., de Oliveira, M.A., Nóbrega, R.H., Lopez-Roques, C., Iampietro, C., Lluch, J., Kloas, W., Wuertz, S., Schaefer, F., Stöck, M., Guiguen, Y., Schartl, M. 2021. A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas). Scientific Reports 11(1):21544 [DOI]
Ahongo, Y.D., Kerneis, T., Goardon, L., Labbe, L., Bugeon, J., Rescan, P.Y., Lefevre, F. 2021. Flesh quality recovery in female rainbow trout (Oncorhynchus mykiss) after spawning. Aquaculture 536 Article Number: 736290 [DOI]
Bertho, S., Herpin, A., Schartl, M., Guiguen, Y. 2021. Lessons from an unusual vertebrate sex-determining gene. Philosophical Transactions of the Royal Society B: Biological Sciences 376(1832): 20200092 [DOI]
Blay, C., Haffray, P., Bugeon, J., D'Ambrosio, J., Dechamp, N., Collewet, G., Enez, F., Petit, V., Cousin, X., Corraze, G., Phocas, F., Dupont-Nivet, M. 2021. Genetic Parameters and Genome-Wide Association Studies of Quality Traits Characterised Using Imaging Technologies in Rainbow Trout, Oncorhynchus mykiss. Frontiers in Genetics 12:639223 [DOI]
Blay, C., Haffray, P., D'Ambrosio, J., Prado, E., Dechamp, N., Nazabal, V., Bugeon, J., Enez, F., Causeur, D., Eklouh-Molinier, C., Petit, V., Phocas, F., Corraze, G., Dupont-Nivet, M. 2021. Genetic architecture and genomic selection of fatty acid composition predicted by Raman spectroscopy in rainbow trout. BMC Genomics 22(1):788 [DOI]
Brosse, S., Baglan, A., Covain, R., Lalagüe, H., Le Bail, P.-Y., Vigouroux, R., Quartarollo, G. 2021. Aquarium trade and fish farms as a source of non-native freshwater fish introductions in French Guiana. Ann. Limnol. - Int. J. Lim. 57, 4 [DOI]
Cardona, E., Bugeon, J., Segret, E., Bobe, J. 2021. VisEgg: a robust phenotyping tool to assess rainbow trout egg features and viability. Fish Physiology and Biochemistry 47: 671–679 [DOI]
Cardona, E., Guyomar, C., Desvignes, T., Montfort, J., Guendouz, S., Postlehwait, J.H., Skiba-Cassy, S., Bobe, J. 2021. Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in raindow trout. BMC Biology 19(1): 235 [DOI]
Colson, V., Ferreira, V.H.B., Luchiari, A.C., Valotaire, C., Borel, F., Bugeon, J., Prigent, S., Dickel, L., Calandreau, L., Guesdon, V. 2021. Loss of light colour preference after chronic embryonic stress in rainbow trout fry: A novel and potential indicator of fish welfare? Applied Animal Behaviour Science 239, Article Number: 105335 [DOI]
Depincé, A., Le Bail, P.-Y., Rouillon, C., Labbé, C. 2021. Embryonic fate after somatic cell nuclear transfer in non-enucleated goldfish oocytes is determined by first cleavages and DNA methylation patterns. Scientific Reports 11: 3945 [DOI]
Desvignes, T., Sydes,J., Montfort, J., Bobe, J., Postlethwait, J.H. 2021. Evolution after whole genome duplication: teleost microRNAs, Molecular Biology and Evolution, msab105 [DOI]
Feron, R., Pan, Q., Wen, M., Imarazene, B., Jouanno, E., Anderson, J., Herpin, A., Journot, L., Parrinello, H., Klopp, C., Kottler, V.A., Roco, A.S., Du, K., Kneitz, S., Adolfi, M., Wilson, C.A., McCluskey, B., Amores, A., Desvignes, T., Goetz, F.W., Takanashi, A., Kawaguchi, M., Detrich, H.W. 3rd, Oliveira, M., Nobrega, R., Sakamoto, T., Nakamoto, M., Wargelius, A., Karlsen, Ø., Wang, Z., Stöck, M., Waterhouse, R.M., Braasch, I., Postlethwait, J.H., Schartl, M., Guiguen, Y. 2021. RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data. Molecular Ecology Resources 21(5):1715-1731 [DOI]
Guiguen, Y., Pasquier, J., Fostier, A., Bobe, J. 2021. Evolution of sex hormone binding globulins reveals early gene duplication at the root of vertebrates. General and Comparative Endocrinology 300: 113646 [DOI]
Herpin, A., Schartl, M., Depince, A., Guiguen, Y, Bobe, J., Hua-Van, A., Hayman, E.S., Octavera, A., Yoshizaki, G., Nichols, K.M., Goetz, G.W., Luckenbach, J.A. 2021. Allelic diversification after transposable element exaptation promoted Gsdf as the master sex determining gene of sablefish. Genome Research 31(8): 1366-1380 [DOI]
Imarazene, B., Beille, S., Jouanno, E., Branthonne, A., Thermes, V., Thomas, M., Herpin, A., Rétaux, S., Guiguen, Y. 2021. Primordial Germ Cell Migration and Histological and Molecular Characterization of Gonadal Differentiation in Pachón Cavefish Astyanax mexicanus. Sexual Development 31(21):4800-4809.e9 [DOI]
Imarazene, B., Du, K., Beille, S., Jouanno, E., Feron, R., Pan, Q., Torres-Paz, J., Lopez-Roques, C., Castinel, A., Gil, L., Kuchly, C., Donnadieu, C., Parrinello, H., Journot, L., Cabau, C., Zahm, M., Klopp, C., Pavlica, T., Al-Rikabi, A., Liehr, T., Simanovsky, S.A., Bohlen, J., Sember, A., Perez, J., Veyrunes, F., Mueller, T.D., Postlethwait, J.H., Schartl, M., Herpin, A., Rétaux, S., Guiguen, Y. 2021. A supernumerary "B-sex" chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus. Current Biology 14(1-6): 80-98 [DOI]
Kleiber, A., Valotaire, C., Patinote, A., Sudan, P.L., Gourmelen, G., Duret, C., Borel, F., Legoff, L., Peyrafort, M., Guesdon, V., Lansade, L., Calandreau, L., Colson, V. 2021. Rainbow trout discriminate 2-D photographs of conspecifics from distracting stimuli using an innovative operant conditioning device. Learning & Behavior 49: 292-306 [DOI]
Klionsky, D.J. et all. 2021. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy 17(1): 1-382 [DOI]
Kratochvil, L., Stock, M., Rovatsos, M., Bullejos, M., Herpin, A., Jeffries, D.L., Peichel, C.L., Perrin, N., Valenzuela, N., Pokorna, M.J. 2021. Expanding the classical paradigm: what we have learnt from vertebrates about sex chromosome evolution. Philosophical Transactions of the Royal Society B-biological Sciences 376(1833): 20200097 [DOI]
Kuhl, H., Guiguen, Y., Höhne, C., Kreuz, E., Du, K., Klopp, C., Lopez-Roques, C., Yebra-Pimentel, E.S., Ciorpac, M., Gessner, J., Holostenco, D., Kleiner, W., Kohlmann, K., Lamatsch, D.K., Prokopov, D., Bestin, A., Bonpunt, E., Debeuf, B., Haffray, P., Morvezen, R., Patrice, P., Suciu, R., Dirks, R., Wuertz, S., Kloas, W., Schartl, M., Stöck, M. 2021. A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes. Philosophical Transactions of the Royal Society B: Biological Sciences 376(1832): 20200089 [DOI]
Longin, G., Bonneau de Beaufort, L., Fontenelle, G., Rinaldo, R., Roussel, J.M., Le Bail, P.-Y. 2021. Fishers’ perceptions of river resources: case study of French Guiana native populations using contextual cognitive mapping. Cybium,45(1), 005-020 [DOI]
Longin, G., Fontenelle, G., Bonneau de Beaufort, L., Delord, C., Launey, S., Rinaldo, R., Lassale, G., Le Bail, P.-Y., Roussel, J.M. 2021. When subsistence fishing meets conservation issues: survey of a small-scale fishery in a neotropical river with high biodiversity value. Fisheries Research 241: 105995 [DOI]
Marisaldi, L., Iorillo, O., Basili, D., Gioacchini, G., Bobe, J., Thermes, V., Maradonna, F., Carnevali, O. 2021. A Comparison of Reproductive Performances in Young and Old Females: A Case Study on the Atlantic Bluefin Tuna in the Mediterranean Sea. Animals (Basel) 11(12): 3340 [DOI]
Morgan, H., Aljumah, A., Rouillon, C., Watkins, A. 2021. Paternal low protein diet and the supplementation of methyl-donors impact fetal growth and placental development in mice. Placenta 103: 124-133 [DOI]
Nakamoto, M., Uchino, T., Koshimizu, E., Kuchiishi, Y., Sekiguchi, R., Wang, L., Sudo, R., Endo, M., Guiguen , Y., Schartl, M., Postlethwait, J.H., Sakamoto, T. 2021. A Y-linked anti-Müllerian hormone type-II receptor is the sex-determining gene in ayu, Plecoglossus altivelis. PLoS Genetics 17(8): e1009705 [DOI]
Pan, Q., Kay, T., Depincé, A., Adolfi, M., Schartl, M.., Guiguen, Y., Herpin, A. 2021. Evolution of master sex determiners: TGF-β signalling pathways at regulatory crossroads. Philosophical Transactions of the Royal Society B: Biological Sciences 376(1832): 20200091 [DOI]
Papa, Y., Le Bail, P.Y., Covain, R. 2021. Genetic landscape clustering of a large DNA barcoding dataset reveals shared patterns of genetic divergence among freshwater fishes of the Maroni Basin. Molecular Ecology Resources 21(6): 2109-2124 [DOI]
Pan, Q., Feron, R., Jouanno, E., Darras, H., Herpin, A., Koop, B., Rondeau, E., Goetz, F.W., Larson, W.A., Bernatchez, L., Tringali, M., Curran, S.S., Saillant, E., Denys, G.P.J., von Hippel, F.A., Chen, S., López, J.A., Verreycken, H., Ocalewicz, K., Guyomard, R., Eche, C., Lluch, J., Roques, C., Hu, H., Tabor, R., DeHaan, P., Nichols, K.M., Journot, L., Parrinello, H., Klopp, C., Interesova, E.A., Trifonov, V., Schartl, M., Postlethwait, J.H., Guiguen, Y. 2021. The rise and fall of the ancient northern pike master sex determining gene. Elife 10: e62858 [DOI]
Perello-Amoros, M., Rallière, C., Gutiérrez, J., Gabillard, J.C. 2021. Myomixer is expressed during embryonic and post-larval hyperplasia, muscle regeneration and differentiation of myoblats in rainbow trout (Oncorhynchus mykiss). Gene 4:145688 [DOI]
Prache, S., Adamiec, C., Astruc, T., Baéza-Campone, E., Bouillot, P.E., Clinquart, A., Feidt, C., Fourat, E., Gautron, J., Girard, A., Guillier, L., Kesse-Guyot, E., Lebret, B., Lefèvre, F., Le Perchec, S., Martin, B., Mirade, P.S., Pierre, F., Raulet, M., Rémond, D., Sans, P., Souchon, I., Donnars, C., Santé-Lhoutellier, V. 2021. Review: Quality of animal-source foods. Animal 16(S1): 100376 [DOI]
Roussel, J.‐M., Covain, R., Vigouroux, R., Allard, L., Treguier, A., Papa, Y., Le Bail, P.‐Y. 2021. Fish communities critically depend on forest subsidies in small neotropical streams with high biodiversity value. Biotropica 53(4): 1096-1108 [DOI]
Stöck, M., Kratochvíl, L., Kuhl, H., Rovatsos, M., Evans, B.J., Suh, A., Valenzuela, N., Veyrunes, F., Zhou, Q., Gamble, T., Capel, B., Schartl, M., Guiguen, Y. 2021. A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'sexomics'. Philosophical Transactions of the Royal Society B: Biological Sciences 376(1832): 20200426 [DOI]
Tani, R., Kawamura, W., Morita, T., Klopp, C., Milhes, M., Guiguen, Y., Yoshizaki, G., Yazawa, R. 2021. Development of a polymerase chain reaction (PCR)-based genetic sex identification method in the chub mackerel Scomber japonicus and blue mackerel S. australasicus. Fisheries Science 87: 785-793 [DOI]
Terlouw, E.M.C., Picard, B., Deiss, V., Berri, C., Hocquette, J.F., Lebret, B., Lefèvre, F., Hamill, R., Gagaoua, M. 2021. Understanding the determination of meat quality using biochemical characteristics of the muscle: Stress at slaughter and other missing keys. Foods 10(1): 84 [DOI]
Tesseraud, S., Avril, P., Bonnet, M., Bonnieu, A., Cassar-Malek, I., Chabi, B., Dessauge, F., Gabillard, J.C., Perruchot, M.H., Seiliez, I. 2021. Autophagy in farm animals: current knowledge and future challenges. Autophagy 17(8):1809-1827 [DOI]
Thompson, A.W., Hawkins, M.B., Parey, E., Wcisel, D.J., Ota, T., Kawasaki, K., Funk, E., Losilla, M., Fitch, O.E.., Pan, QW., Feron, R., Louis, A., Montfort, J., Milhes, M., Racicot, B.L., Childs, K.L., Fontenot, Q., Ferrara, A., David, S.R., McCune, A.R., Dornburg, A., Yoder, J.A., Guiguen, Y., Crollius, H.R., Berthelot, C., Harris, M.P., Braasch, I. 2021. The bowfin genome illuminates the developmental evolution of ray-finned fishes. Nature Genetics 53: 1373-1384 [DOI]
Yilmaz, O., Com, E., Lavigne, R., Pineau, C., Bobe, J. 2021. Liquid chromatography and tandem mass spectrometry in label-free protein quantification of zebrafish (Danio rerio) eggs. Methods in Molecular Biology 2218:277-290 [DOI]
Yilmaz, O., Patinote, A., Com, E., Pineau, C.,Bobe, J. 2021. Knock out of specific maternal vitellogenins in zebrafish (Danio rerio) evokes vital changes in egg proteomic profiles that resemble the phenotype of poor quality eggs. BMC Genomics 22 (1), pp.308 [DOI]
Żarski, D., Le Cam, A., Frohlich, T., Kösters, M., Klopp, C., Nynca, J., Ciesielski, S., Sarosiek, B., Dryl, K., Montfort, J., Król, J., Fontaine, P., Ciereszko, A., Bobe, J. 2021. Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish. Genomics 113 (6): 3811-3826 [DOI]
Book chapter
Yilmaz, O., Com, E., Lavigne, R., Pineau, C., Bobe, J. 2021. Liquid Chromatography and Tandem Mass Spectrometry in Label-Free Protein Quantification of Zebrafish (Danio rerio) Eggs. In « Germline Development in the Zebrafish –Methods in Molecular Biology » Edited by Dosch, R. Volume 2218: 277-290. Article Number 1166524 [DOI]
