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Publications 2020

Publications 2020
Articles and book chapters published in 2020 (update January 2021)


Callet, T. , Hu, H. Larroquet, L. , Surget, A., Liu, J. , Plagnes-Juan, E. , Maunas, P. , Turonnet, N. , Mennigen J.A., Bobe, J., Burel, C., Corraze, G. , Panserat, S., Marandel, L. 2020. Exploring the impact of a low-protein high-carbohydrate diet in mature broodstock of a glucose-intolerant teleost, the rainbow trout. Frontiers in Phylosophy 11(303):1-21 [DOI]

Cardona, E., Bugeon, J., Segret, E., Bobe, J. 2020. VisEgg: a robust phenotyping tool to assess rainbow trout egg features and viability. Fish Physiology and Biochemistry In press [DOI]

Depince, A., Gabory, A., Dziewulska, K.,  Le Bail, P.Y., Jammes, H., Labbe, C. 2020. DNA methylation stability in fish spermatozoa upon external constraint: Impact of fish hormonal stimulation and sperm cryopreservation. Molecular Reproduction and Development 87 (1): 124-134 [DOI]

Du, K., Stöck, M., Kneitz, S., Klopp, C., Woltering, J.M., Adolfi, M.C., Feron, R., Prokopov, D., Makunin, A., Kichigin, I., Schmidt, C., Fischer, P., Kuhl, H., Wuertz, S., Gessner, J., Kloas, W., Cabau, C., Iampietro, C., Parrinello, H., Tomlinson, C., Journot, L., Postlethwait, J.H., Braasch, I., Trifonov, V., Warren, W.C., Meyer, A., Guiguen, Y., Schartl, M. 2020. The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization. Nature Ecology and Evolution 4: 841–852 [DOI]

Feron, R., Zahm, M., Cabau, C., Klopp, C., Roques, C., Bouchez, O., Eché, C., Valière, S., Donnadieu, C., Haffray, P., Bestin, A., Morvezen, R., Acloque, H., Euclide, P.T., Wen, M., Jouano, E., Schartl, M., Postlethwait, J.H., Schraidt, C., Christie, M.R., Larson, W.A., Herpin, A., Guiguen, Y. 2020. Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens. Molecular Ecology Resources 1-13 [DOI]

Fraslin, C., Phocas, F., Bestin, A., Charles, M., Bernard, M., Krieg, F., Dechamp, N., Ciobotaru, C., Hozé, C., Petitprez, F., Milhes, M., Lluch, J., Bouchez, O., Poncet, C., Hocdé, P., Haffray, P., Guiguen, Y., Quillet, E. 2020. Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing. Scientific Reports 10(1): 17693 [DOI]

Herpin, A., Lescat, L., Bobe, J., Jenny, A., Seiliez, I. 2020. Lighting chaperone-mediated autophagy (CMA) evolution with an ancient LAMP: the existence of a functional CMA activity in fish. Autophagy 16(10): 1918-1920 [DOI]

Kottler, V. A., Feron, R., Nanda, I., Klopp, C., Du, K., Kneitz, S., Helmprobst, F., Lamatsch, D. K., Lopez-Roques, C., Lluch, J., Journot, L., Parrinello, H., Guiguen, Y., Schartl, M. 2020. Independent origin of XY and ZW sex determination mechanisms in Mosquitofish sister species. Genetics 214 (1): 193-209 [DOI]

Lansade, L., Colson, V., Parias, C., Trösch, M., Reigner, F., Calandreau, V. 2020. Female horses spontaneously identify a photograph of their keeper, last seen six months previously. Scientific Reports 10(6302): 1-9 [DOI]

Lansade, L., Colson, V., Parias, C., Reigner, F., Bertin, A., Calandreau, L. 2020. Human Face Recognition in Horses: Data in Favor of a Holistic Process. Frontiers in Psychology 11: 575808 [DOI]

Lesage, M., Thomas, M., Bugeon, J., Branthonne, A., Gay, S., Cardona, E., Haghebaert, M., Mahé, F., Bobe, J., Thermes, V. 2020. C-ECi: A cubic-ECi combined clearing method for 3D follicular content analysis in the fish ovary. Biology of Reproduction 103(5): 1099-1109 [DOI]

Lescat, L., Véron, V., Mourot, B., Péron, S., Chenais, N., Dias, K., Riera, N., Beaumatin, F., Pinel, K., Priault, M., Panserat, S., Salin, B., Guiguen, Y., Bobe, J., Herpin, A., Seiliez, I. 2020. Chaperone-Mediated Autophagy in the light of evolution: insight from fish. Molecular Biology and Evolution 37(10): 2887-2899 [DOI

Lobo, I.K.C., Nascimento, Á.R.D., Yamagishi, M.E.B., Guiguen, Y., Silva, G.F.D., Severac, D., Amaral, A.D.C., Reis, V.R., Almeida, F.L. 2020. Transcriptome of tambaqui Colossoma macropomum during gonad differentiation: Different molecular signals leading to sex identity.  Genomics  112(3): 2478-2488 [DOI]

Nynca, J., Zarski, D., Bobe, J., Ciereszko, A. 2020.  Domestication is associated with differential expression of pikeperch egg proteins involved in metabolism, immune response and protein folding. Animal 14(11): 2336-2350 [DOI]

Parey, E., Louis, A., Cabau, C., Guiguen, Y., Crollius, H.R., Berthelot, C. 2020. Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications. Molecular Biology and Evolution 37(11): 3324–3337 [DOI]

Pottier, G., Beaumont, W. R., Marchand, F., Le Bail, P.-Y., Azam, D., Rives, J., Vigouroux, Roussel, J.-M. 2020. Electrofishing in streams of low water conductivity but high biodiversity value: Challenges, limits and perspectives. Fisheries Management and Ecology 27(1): 52-63 [DOI]

Prchal, M., Kocour, Vandeputte, M., Kause, A., Vergnet, A., Zhao, Gela, Kašpar, Genestout, L., Bestin, A., Haffray, P., Bugeon, J. 2020. Morphological predictors of slaughter yields using 3D digitizer and their use in a common carp breeding program. Aquaculture 520: 1-9 [DOI]

Rafati, N., Chen, J.F., Herpin, A., Pettersson, M.E., Han, F., Feng, C .G., Wallerman, O., Rubin, C.J., Peron, S., Cocco, A.,  Larsson, M., Trotschel, C., Poetsch, A., Korsching, K., Bonigk, W., Korschen, H.G., Berg, F., Folkvord, A., Kaupp, U.B., Schartl, M., Andersson, L. 2020. Reconstruction of the birth of a male sex chromosome present in Atlantic herring. Proceedings of the National Academy of Sciences of the United States of America 117(39): 24359-24368 [DOI]

Takehana, Y. Zahm, M., Cabau, C., Klopp, C., Roques, C., Bouchez, O., Donnadieu, C., Barrachina, C., Journot, L., Kawaguchi, M., Yasumasu, S., Ansai, S., Naruse, K., Inoue, K., Shinzato, C., Schartl, M., Guiguen, Y., Herpin, A. 2020. Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus: A Small Aquarium Fish Model for Studies on Adaptation to Salinity. G3-Genes Genomes Genetics 10(3): 907-915 [DOI]

Tesseraud, S., Avril, P., Bonnet, M., Bonnieu, A., Cassar-Malek, I., Chabi, B., Dessauge, F., Gabillard, J.C., Perruchot, M.H., Seiliez, I. 2020. Autophagy in farm animals: current knowledge and future challenges. Autophagy In press [DOI]

Valotaire, C., Borel, F., Leterrier, C., Guilloteau, L., Colson, V. 2020. Early chronic hypoxia does not impact rainbow trout behaviour later in life. Aquaculture Reports 1-8 [DOI]

Wen, M., Feron, R., Pan, Q., Guguin, J., Jouanno, E., Herpin, A., Klopp, C., Cabau, C., Zahm, M., Parrinello, H., Journot, L., Burgess, S.M., Omori, Y, Postlethwait, J.H., Schartl, M., Guiguen, Y. 2020. Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758). BMC Genomics 21:552 [DOI]

Żarski, D., Le Cam, A., Nynca, J., Klopp, C., Ciesielski, S., Sarosiek, B., Montfort, J., Król, J., Fontaine, P., Ciereszko, A., Bobe, J. 2020. Domestication modulates the expression of genes involved in neurogenesis in high-quality eggs of Sander lucioperca. Molecular Reproduction and Development 87(9): 934-951 [DOI]

Zhao, J., Prchal, Palaiokostas, C., Houston, R. D., Kause, A., Vandeputte, M., Vergnet, A., Bugeon, J., Bestin, A., Veselý, T., Pokorová, Piačková, Pojezdal, Genestout, L., Gela, Kroupová, Kocour. 2020. Genetic relationship between koi herpesvirus disease resistance and production traits inferred from sibling performance in Amur mirror carp. Aquaculture 520: 1-6 [DOI]