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24, chemin de Borde Rouge -Auzeville - CS52627 31326 Castanet Tolosan cedex - France

Last update: May 2021

Menu Logo Principal Institut Agro Rennes Angers Rennes 1 University Logo Igepp

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List of software developed at Igepp:

SimClone: forward simulations of diploid populations at increasing rates of clonality to analyse their relationships with clonal richness, distribution of clonal sizes, FIS and linkage disequilibrium

Download source code (CC BY-NC-ND 3.0 FR)

Stoeckel, S., Porro, B., & Arnaud-Haond, S. (2019). Revising upward our appraisal of clonal rates in partially clonal organisms: the discernible and the hidden effects of clonality on the genotypic and genetic states of populations. ArXiv:1902.09365 [q-Bio] v4 peer-reviewed and recommended by Peer Community in Evolutionary Biology. Retrieved from  doi: arXiv:1902.09365

Contact: S. Stoeckel

ClonEstiMate 1.02

Becheler Ronan, Masson Jean-Pierre, Arnaud-Haond Sophie, Halkett Fabien, Mariette Stéphanie, Guillemin Maire-Laure, Valéro Myriam, Destombe Christophe, Stoeckel Solenn (2017). ClonEstiMate, a Bayesian method for quantifying rates of clonality of populations genotyped at two-time steps. Molecular Ecology Resources, 17, e251–e267.

Download for GNU/Linux

Download for Windows

Contact: S. Stoeckel

XPloidAssignment 1.0

Montecinos AE, Guillemin M-L, Couceiro L, Peters AF, Stoeckel S & Valero M (2017). Hybridization between two cryptic filamentous brown seaweeds along the shore: Analysing pre- and post-zygotic barriers in populations of individuals with varying ploidy levels. Molecular Ecology, Accepted manuscript online: 12 March 2017.

Download for GNU/Linux

Download for Windows

Contact: S. Stoeckel


K. Reichel, V. Bahier, C. Midoux, J.-P. Masson, S. Stoeckel soumis : "Interpretation and approximation tools for big, dense Markov chain transitions matrices in population genetics". pdf


Contact: K. Reichel


Stoeckel S. & Masson J.P. (2014). The Exact Distributions of FIS under Partial Asexuality in Small Finite Populations with Mutation. PLoS ONE, 9(1): e85228. pdf


Contact: S. Stoeckel